Publications

Publications are in reversed chronological order.

2024

  1. Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response
    Regina Mencia , Agustı́n L Arce , Candela Houriet , Wenfei Xian , Adrián Contreras , Gautam Shirsekar , Detlef Weigel , and Pablo A Manavella
    Nature structural & molecular biology, 2024
  2. Atlas of telomeric repeat diversity in Arabidopsis thaliana
    Yueqi Tao , Wenfei Xian , Zhigui Bao , Fernando A Rabanal , Andrea Movilli , Christa Lanz , Gautam Shirsekar , and Detlef Weigel
    Genome Biology, 2024
  3. Pangenomic context reveals the extent of intraspecific plant NLR evolution
    Luisa C Teasdale , Kevin D Murray , Max Collenberg , Adrián Contreras-Garrido , Theresa Schlegel , Leon Ess , Justina Jüttner , Christa Lanz , Oliver Deusch , Joffrey Fitz , and others
    bioRxiv, 2024
  4. Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought
    Talia L Karasov , Manuela Neumann , Laura Leventhal , Efthymia Symeonidi , Gautam Shirsekar , Aubrey Hawks , Grey Monroe , Moisés Exposito-Alonso , Joy Bergelson , and others
    Nature Microbiology, 2024
  5. The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research
    1001 Genomes Plus Consortium , Carlos C Alonso-Blanco , Haim Ashkenazy , Pierre Baduel , Zhigui Bao , Claude Becker , Erwann Caillieux , Vincent Colot , Duncan Crosbie , Louna De Oliveira , and others
    bioRxiv, 2024

2023

  1. Cycles of satellite and transposon evolution in Arabidopsis centromeres
    Piotr Wlodzimierz , Fernando A Rabanal , Robin Burns , Matthew Naish , Elias Primetis , Alison Scott , Terezie Mandáková , Nicola Gorringe , Andrew J Tock , Daniel Holland , and others
    Nature, 2023

2022

  1. vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA
    Frank Vogt* , Gautam Shirsekar* , and Detlef Weigel
    Bioinformatics, 2022

2021

  1. Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
    Derek S Lundberg , Pratchaya Pramoj Na Ayutthaya , Annett Strauß , Gautam Shirsekar , Wen-Sui Lo , Thomas Lahaye , and Detlef Weigel
    Elife, 2021
  2. Multiple sources of introduction of north American arabidopsis thaliana from across Eurasia
    Gautam Shirsekar , Jane Devos , Sergio M Latorre , Andreas Blaha , Maique Queiroz Dias , Alba González Hernando , Derek S Lundberg , Hernán A Burbano , Charles B Fenster , and Detlef Weigel
    Molecular biology and evolution, 2021

2020

  1. Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves
    Julian Regalado , Derek S Lundberg , Oliver Deusch , Sonja Kersten , Talia Karasov , Karin Poersch , Gautam Shirsekar , and Detlef Weigel
    The ISME journal, 2020
  2. What natural variation can teach us about resistance durability
    Talia L Karasov , Gautam Shirsekar , Rebecca Schwab , and Detlef Weigel
    Current opinion in plant biology, 2020

2019

  1. Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector-and PAMP-triggered immunity
    Pengfei Bai , Chan-Ho Park , Gautam Shirsekar , Pattavipha Songkumarn , Maria Bellizzi , and Guo-Liang Wang
    Molecular Plant Pathology, 2019
  2. The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere
    Talia L Karasov , Manuela Neumann , Alejandra Duque-Jaramillo , Sonja Kersten , Ilja Bezrukov , Birgit Schröppel , Efthymia Symeonidi , Derek S Lundberg , Julian Regalado , Gautam Shirsekar , and others
    BioRxiv, 2019

2018

  1. OsWRKY67 plays a positive role in basal and XA21-mediated resistance in rice
    Kieu TX Vo , Chi-Yeol Kim , Trung V Hoang , Sang-Kyu Lee , Gautam Shirsekar , Young-Su Seo , Sang-Won Lee , Guo-Liang Wang , and Jong-Seong Jeon
    Frontiers in plant science, 2018
  2. The monocot-specific receptor-like kinase SDS2 controls cell death and immunity in rice
    Jiangbo Fan , Pengfei Bai , Yuese Ning , Jiyang Wang , Xuetao Shi , Yehui Xiong , Kai Zhang , Feng He , Chongyang Zhang , Ruyi Wang , and others
    Cell host & microbe, 2018

2017

  1. Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector and PAMP-triggered immunity
    Pengfei Bai , Chan Ho Park , Gautam Shirsekar , Pattavipha Songkumarn , Maria D Bellizzi , and Guo-Liang Wang
    In 2017 APS Annual Meeting, 2017

2016

  1. The E3 ligase APIP10 connects the effector AvrPiz-t to the NLR receptor Piz-t in rice
    Chan Ho Park* , Gautam Shirsekar* , Maria Bellizzi , Songbiao Chen , Pattavipha Songkumarn , Xin Xie , Xuetao Shi , Yuese Ning , Bo Zhou , Pavinee Suttiviriya , and others
    PLoS pathogens, 2016
  2. Quantification of hydrogen peroxide in plant tissues using Amplex Red
    Sourav Chakraborty , Amy L Hill , Gautam Shirsekar , Ahmed J Afzal , Guo-Liang Wang , David Mackey , and Pierluigi Bonello
    Methods, 2016
  3. Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens
    Clemens L Weiß , Verena J Schuenemann , Jane Devos , Gautam Shirsekar , Ella Reiter , Billie A Gould , John R Stinchcombe , Johannes Krause , and Hernán A Burbano
    Royal Society open science, 2016

2015

  1. Sources of resistance to Indian pathotypes of Puccinia graminis tritici and P. triticina in durum wheat
    Akhilesh N Mishra , Gautam S Shirsekar , Sitaram Yadav , Kamini Kaushal , Vijay G Dubey , and Sakuru V Sai Prasad
    Plant Breeding, 2015
  2. Validation of race non-specific, adult plant leaf rust resistance genes Lr34 and Lr67 in some common wheat (Triticum aestivum L.) cultivars
    AN Mishra , K Kaushal , VG Dubey , GS Shirsekar , and SV Sai Prasad
    INDIAN JOURNAL OF GENETICS AND PLANT BREEDING, 2015

2014

  1. Identification and characterization of suppressor mutants of spl11-mediated cell death in rice
    Gautam S Shirsekar* , Miguel E Vega-Sanchez* , Alicia Bordeos , Marietta Baraoidan , Andrew Swisshelm , Jiangbo Fan , Chan Ho Park , Hei Leung , and Guo-Liang contribution)
    Molecular Plant-Microbe Interactions, 2014

2013

  1. Ubiquitination in Innate Immunity of Rice (Oryza sativa)
    Gautam Shashikant Shirsekar
    The Ohio State University, 2013

2012

  1. The U-Box E3 ligase SPL11/PUB13 is a convergence point of defense and flowering signaling in plants
    Jinling Liu , Wei Li , Yuese Ning , Gautam Shirsekar , Yuhui Cai , Xuli Wang , Liangying Dai , Zhilong Wang , Wende Liu , and Guo-Liang Wang
    Plant physiology, 2012
  2. The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern–triggered immunity in rice
    Chan-Ho Park* , Songbiao Chen* , Gautam Shirsekar* , Bo Zhou* , Chang Hyun Khang , Pattavipha Songkumarn , Ahmed J Afzal , Yuese Ning , Ruyi Wang , Maria Bellizzi , and others
    The Plant Cell, 2012
  3. The fungal effector AvrPiz-t suppresses host innate immunity by targeting the RING finger E3 ligases APIP6 and APIP10 in rice
    C Park , S Chen , G Shirsekar , B Zhou , C Khang , P Songkumarn , M Bellizzi , Y Ning , B Valent , and G Wang
    In PHYTOPATHOLOGY, 2012

2011

  1. Diversity for Resistance to Stem and Leaf Rusts in Indian Wheat Germplasm
    Mishra AN , Yadav SR , Shirsekar GS , Dubey VG , Kaushal K , and Sai Prasad SV
    Indian Journal of Plant Genetic Resources, 2011

2010

  1. Role of ubiquitination in plant innate immunity and pathogen virulence
    Gautam Shirsekar , Liangying Dai , Yajun Hu , Xuejun Wang , Lirong Zeng , and Guo-Liang Wang
    Journal of Plant Biology, 2010

2005

  1. The linkage between the stem rust resistance gene Sr2 and pseudo-black chaff in wheat can be broken
    Akhilesh Mishra , Kamini Kaushal , Sitaram Yadav , Gautam Shirsekar , and Pandey HN
    Plant Breeding, 2005
  2. Genetic basis of seedling-resistance to leaf rust in bread wheat ‘Thatcher’
    Plant Breeding, 2005
  3. A leaf rust resistance gene, different from Lr34, associated with leaf tip necrosis in wheat
    A. N. Mishra , K. Kaushal , S. R. Yadav , G. S. Shirsekar , and H. N. Pandey
    Plant Breeding, 2005